MR Spectroscopy IDs Breast Cancers, Node Involvement

MR Spectroscopy IDs Breast Cancers, Node Involvement

ORLANDO—A computer-based diagnostic system for breast cancer using
magnetic resonance spectroscopy (MRS) plus a statistical classification
strategy (SCS) is ready for acceptance testing in the clinic, Australian
researchers said at the Era of Hope Department of Defense Breast Cancer
Research meeting.

"We’re addressing two of the major clinical problems that face the
management of breast disease," said Cynthia L. Lean, PhD, deputy head,
Department of Magnetic Resonance in Medicine, University of Syd-ney,
Institute for Magnetic Resonance Research (IMRR). "The first problem is the
limitation of histopathology, and the second is the need for fast and
accurate assessment of prognostic factors, in particular lymph node

She noted that although histopathology is "the gold standard," clinical
outcomes often differ from those predicted by histopathology. "It’s a
qualitative analysis dependent on the clinician. Also, sampling errors occur.
Histopathologists routinely assess less than 1% of the tissue. Because
disease is a multistep process and there are a limited number of ways a cell
can change appearance, early cancer or premalignant changes may not be
detected during evaluation," she said.

MRS analyzes chemicals present in a small suspension of cells removed via
fine needle aspiration from a suspicious area of the breast, to identify
areas of increased chemical activity indicating malignancy. "Within 20
minutes of putting the cellular sample into the spectrometer, we are able to
obtain a chemical profile," Dr. Lean said. If a malignancy is found, a
computer program evaluates the likelihood of lymph node involvement.

Initially, the team compared the MRS results visually and could tell
benign from malignant disease with a sensitivity of 95% and a specificity of
96%. But researchers were able to look at only about 50 of the 4,096 data
points in each spectrum. Thus, the team, working with the Institute for
Biodiagnostics at the National Research Council of Canada, developed the SCS
software to aid in data acquisition and classification.

The SCS develops classifiers to recognize patterns containing complex
information. These patterns would not be
obvious by visual inspection of the spectrum. "We wanted the clinician to
obtain a confidence in the diagnosis," she said, "and we wanted to overcome
deficiencies in standard pattern recognition techniques." SCS uses a
three-stage process. The first is feature selection, in which the
discriminating regions are pulled out of the spectrum. The second stage uses
these subregions to develop classifiers yielding probabilities of class
assignment for the individual spectra. If during the classifier development
stage, the sample cannot be classified as either benign or malignant with a
probability of greater than 75%, stage three is activated, wherein the
aggregate of two independent classifiers are used to develop a computerized
consensus diagnosis.

The system has been tested in several databases of cells from patients
undergoing breast biopsy for suspicious lesions. "The technique is very
powerful," Dr. Lean said. "We can determine malignant or benign with an
overall accuracy of 96% and a crispness of 98%. (Crispness indicates a class
probability greater than 75%.) Just as important, but more surprising to us,
we were able to predict, from the fine needle biopsy, if the lymph nodes were
involved with an accuracy of 95% and a crispness of 95%." The technique also
was able to identify vascular invasion, a possible prognostic factor, but
clinicians have expressed less interest in this aspect of the research, she


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